Antigen

Antigen Class

TFs and others

Antigen

Smc1a

Cell type

Cell type Class

Neural

Cell type

Cerebellum

MeSH Description

The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Sample

source_name

Smc1 ChIP-seq Chd4 cKO

developmental stage

P22

genotype/variation

Chd4 cKO

tissue

Cerebellum

chip antibody

Smc1 (Bethyl A300-055A)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Protein-DNA complexes were isolated from sonicated lysates.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

23384337

Reads aligned (%)

98.9

Duplicates removed (%)

3.8

Number of peaks

49958 (qval < 1E-05)

mm9

Number of total reads

23384337

Reads aligned (%)

98.8

Duplicates removed (%)

3.9

Number of peaks

49981 (qval < 1E-05)