Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc1a

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
Smc1 ChIP-seq Chd4 cKO
developmental stage
P22
genotype/variation
Chd4 cKO
tissue
Cerebellum
chip antibody
Smc1 (Bethyl A300-055A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Protein-DNA complexes were isolated from sonicated lysates.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
23384337
Reads aligned (%)
98.9
Duplicates removed (%)
3.8
Number of peaks
49958 (qval < 1E-05)

mm9

Number of total reads
23384337
Reads aligned (%)
98.8
Duplicates removed (%)
3.9
Number of peaks
49981 (qval < 1E-05)

Base call quality data from DBCLS SRA